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There are many tools and S/W systems to generate finite state automata, FSA, due to its importance in modeling and simulation and its wide
variety of applications. However, no appropriate tool that can generate finite state automata, FSA, for DNA motif template due to the huge
size of the motif template. In addition to the optional paths in the motif structure which are represented by the gap. These reasons lead to the
unavailability of the specifications of the automata to be generated. This absence of specifications makes the generating process very difficult.
This paper presents a novel algorithm to construct FSAs for DNA motif templates. This research is the first research presents
the problem of generating FSAs for DNA motif temp
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