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Modified Automated Scoring system for Immunohistochemical staining using commercially available low cost software for image analysis

Background: During the past several years, there has been a rapidly escalating clinical need to perform IHC stains that require quantitative interpretation. Automated Cellular
Imaging System is used to analyze immunohistochemically stained slides, primarily for cancer-related diagnostics. Studies have shown that the device offers accuracy,
precision, and reproducibility of immunostained slide analysis exceeding that possible with manual evaluation, which was the prevailing method.
Aim of the study In this article we will demonstrate that meaningful image analysis of immunohistochemical staining studies can be performed using inexpensive, widely distributed
graphics software (Adobe Photoshop) on a personal computer. Also we will try to use a modified digital scoring system depending on the percentage of pixels that are showing a given
stain with regard to the total area of the slide. We select three sets for each antigen (one is optimally stained, one is insufficiently stained and third one is not stained one)
materials and methods Thirty digital pictures of immunohistochemically stained slides with monoclonal antibodies against different antigens, from standard quality control lab
(NORDIQC) and then were analyzed by Adobe Photoshop software, then we distribute the percent of pixels showing a giving band of the brown color into five groups, then we compare
those results in the three groups.
Results: Results showed that there was significant difference between color bands of the same tissue among optimal and insufficient staining (P<0.05), also there was significant difference between the group of slides that were optimally stained with those insufficiently stained (p<0.05), that’s to say the procedure of scoring that was done was accurate in discriminating between optimal staining and insufficient staining
Conclusion: Each slide was converted into a matrix of data that describe every pixel in the slide and by that we can compare between all slides that’s to say we convert the visual manual
evaluation into an automated objective analysis, which is the first step in establishing quantitative immunohistochemistry.

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Publication Date
Tue Sep 30 2014
Journal Name
Iraqi Journal Of Chemical And Petroleum Engineering
Evaluation of Hydrocarbon Saturation Using Carbon Oxygen (CO) Ratio and Sigma Tool

 

The main aim of this study is to evaluate the remaining oil in previously produced zones, locate the water productive zone and look for any bypassed oil behind casing in not previously perforated intervals. Initial water saturation was calculated from digitized open hole logs using a cut-off value of 10% for irreducible water saturation. The integrated analysis of the thermal capture cross section, Sigma and Carbon/oxygen ratio was conducted and summarized under well shut-in and flowing conditions. The logging pass zone run through sandstone Zubair formation at north Rumaila oil field. The zones where both the Sigma and the C/O analysis show high remaining oil saturation simila

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Publication Date
Thu Apr 20 2023
Journal Name
Ibn Al-haitham Journal For Pure And Applied Sciences
Improvement of Dental Composite Resin Using Supra -Nano Chicken thigh Bone Fibers

Supra nanoparticles (submicron) of Chicken bones fibers were used (before and after treated with citric acid solution) as additives  to dental composite with the weight ratios (1%, 2% and 4%). The main mechanical tests represented by hardness, wear resistance and compression strength was carried out on the improvement dental composites.

The addition of treated supra nanoparticles Chicken thigh bones with particles size (300 nm) by weight ratio (1%) to ordinary dental composite resin , significantly improves all of its mechanical properties, in addition to the increase the value of the its  glass transition temperature from  43oC  to 45.4 oC. The techniques X-ray diffraction (XRD), Energy Dispersive Spectr

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Publication Date
Sun Dec 06 2009
Journal Name
Baghdad Science Journal
Study of the Porosity of Certain pharmaceutical Tablets using Mercury Intrusion Porosimeter

Porosity and pore structure are important characteristics of pharmaceutical tablets, since they influence the physical properties, such as mechanical strength, density and disintegration time. This paper is an attempt to investigate the pore structure of four different paracetamol tablets based on mercury porosimetry. The intrusion volumes of mercury were used to calculate the pore diameter, pore volume and pore size distribution. The result obtained indicate that the variation of the pore volume in the tablets followed the sequence:- S.D.I. Iraq? Pharmacare,Dubai-U.A.E.? Bron and Burk(UK) London?Lark Laboratories(India), while the variation of surface area followed the sequence:- S.D.I. Iraq? Lark Laboratories(India)? Pharmacare,Dubai-U.A

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Publication Date
Thu May 14 2015
Journal Name
International Journal Of Computer Applications
Performance Evaluation of Zigbee Routing Protocol under Various Conditions using OPNET Modeler

Zigbee, which has the standard IEEE 802.15.4. It is advisable method to build wireless personal area network (WPAN) which demands a low power consumption that can be produced by Zigbee technique. Our paper gives measuring efficiency of Zigbee involving the Physical Layer (PL) and Media Access Control (MAC) sub-layer , which allow a simple interaction between the sensors. We model and simulate two different scenarios, in the first one, we tested the topological characteristics and performance of the IEEE802.15.4 standard in terms of throughput, node to node delay and figure of routers for three network layouts (Star, Mesh and Cluster Tree) using OPNET simulator. The second scenario investigates the self-healing feature on a mesh

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Publication Date
Fri Nov 24 2023
Journal Name
Iraqi Journal Of Science
Seroprevalence of Toxoplasma gondii in Schizophrenic Patients in Iraq using ELISA test

Toxoplasmosis is a widespread infection of great importance, and that the disease does not show any clinical specific signs . this study was performed on 200 patients with schizophrenia were collected from :Al-Rashad Teaching Hospitals and 100 healthy individuals, considered as control group, the samples were collected during the period of December 2012 until the end of February, 2013. Antibodies against T. gondii parasite in the serum were detected by using latex agglutination test (LAT) and showed a percentage of positive antibodies in schizophrenic patients and healthy individuals (control) 143(71.5%) and 45( 45%) respectively.While using Enzyme Linked Immunosorbent Assay (ELISA) the positive blood sera in LAT test of the schizophreni

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Publication Date
Wed Dec 14 2016
Journal Name
Journal Of Baghdad College Of Dentistry
Evaluation of Mandibular Third Molar Position by Using Space-Width Ratio Method

Background: The prediction of changes in the mandibular third molar position and eruption is an important clinical concern because third molar retention may be beneficial for orthodontic anchorage. The aims of this study were to assess the mandibular third molar position by using medical CT scan and lateral reconstructed radiograph and evaluate gender differences. Materials and Methods: The sample of present study consisted of 39 patients (18 males and 21 females) with age range 11-15 years who were attending at Al-Suwayra General Hospital/ the Computerized Tomography department. The distance from anterior edge of ramus to distal surface of permanent mandibular second molar and mesio-distal width of developing mandibular third molar were

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Publication Date
Thu Apr 01 2021
Journal Name
Biochemical And Cellular Archive
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Publication Date
Tue Mar 30 2010
Journal Name
Iraqi Journal Of Chemical And Petroleum Engineering
Minimization of Toxic Ions in Waste Water Using Emulsion Liquid Membrane Technique

In the present study, the removal of zinc from synthetic waste water using emulsion liquid membrane extraction technique was investigated. Synthetic surfactant solution is used as the emulsifying agent. Diphenylthiocarbazon (ditizone) was used as the extracting agent dissolved in carbon tetrachloride as the organic solvent and sulfuric acid is used as the stripping agent. The parameters that influence the extraction percentage of Zn+2 were studied. These are the ratio of volume of organic solvent to volume of aqueous feed (0.5-4), ratio of volume of surfactant solution to volume of aqueous feed (0.2-1.6), pH of the aqueous feed solution (5-10), mixing intensity (100-1000) rpm, concentration of extracting agent (20-400) ppm, surfactant co

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Publication Date
Sun Jul 30 2023
Journal Name
Iraqi Journal Of Science
Performance Estimation of Solar Imagery Using Different Types of Atmospheric Turbulence Models

     This paper proposed several approaches for estimating the optical turbulence of the Earth’s atmosphere and their effect on solar images’ resolution using ground-based telescopes based on von Kárman, Kolmogorov, and modified von Kárman PSDs models. The results showed a strong correlation coefficient for the modified von Kármán model of atmospheric representation. As can be seen in the case where solar adaptive optics have been properly designed, they typically decrease aberration considerably and provide greatly improved imagery.

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Publication Date
Sat Aug 31 2019
Journal Name
Iraqi Journal Of Physics
Quality assurance of the linear accelerator device using Star Track and Perspex

In this study, the quality assurance of the linear accelerator available at the Baghdad Center for Radiation Therapy and Nuclear Medicine was verified using Star Track and Perspex. The study was established from August to December 2018. This study showed that there was an acceptable variation in the dose output of the linear accelerator. This variation was ±2% and it was within the permissible range according to the recommendations of the manufacturer of the accelerator (Elkta).

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