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Deep Learning-based Predictive Model of mRNA Vaccine Deterioration: An Analysis of the Stanford COVID-19 mRNA Vaccine Dataset
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The emergence of SARS-CoV-2, the virus responsible for the COVID-19 pandemic, has resulted in a global health crisis leading to widespread illness, death, and daily life disruptions. Having a vaccine for COVID-19 is crucial to controlling the spread of the virus which will help to end the pandemic and restore normalcy to society. Messenger RNA (mRNA) molecules vaccine has led the way as the swift vaccine candidate for COVID-19, but it faces key probable restrictions including spontaneous deterioration. To address mRNA degradation issues, Stanford University academics and the Eterna community sponsored a Kaggle competition.This study aims to build a deep learning (DL) model which will predict deterioration rates at each base of the mRNA molecule. A sequence DL model based on a bidirectional gated recurrent unit (GRU) is implemented. The model is applied to the Stanford COVID-19 mRNA vaccine dataset to predict the mRNA sequences deterioration by predicting five reactivity values for every base in the sequence, namely reactivity values, deterioration rates at high pH, at high temperature, at high pH with Magnesium, and at high temperature with Magnesium. The Stanford COVID-19 mRNA vaccine dataset is split into the training set, validation set, and test set. The bidirectional GRU model minimizes the mean column wise root mean squared error (MCRMSE) of deterioration rates at each base of the mRNA sequence molecule with a value of 0.32086 for the test set which outperformed the winning models with a margin of (0.02112). This study would help other researchers better understand how to forecast mRNA sequence molecule properties to develop a stable COVID-19 vaccine.

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Publication Date
Sun Dec 01 2024
Journal Name
Energy Storage
Comprehensive Study of <scp>PAN</scp>‐<scp>NaBF<sub>4</sub></scp> Solid Polymer Electrolytes: Insights Into Optical, Structural, Thermal, Electrical, and Electrochemical Properties for Sodium‐Ion Batteries
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ABSTRACT<p>This research explores the use of solid polymer electrolytes (SPEs) as a conductive medium for sodium ions in sodium‐ion batteries, presenting a possible alternative to traditional lithium‐ion battery technology. The researchers prepare SPEs with varying molecular weight ratios of polyacrylonitrile (PAN) and sodium tetrafluoroborate (NaBF<sub>4</sub>) using a solution casting method with dimethyl formamide as the solvent. Through optical absorbance measurements, we identified the PAN:NaBF<sub>4</sub> (80:20) SPE composition as having the lowest energy band gap value (4.48 eV). This composition also exhibits high thermal stability based on thermogravimetric analysis results. </p> ... Show More
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Publication Date
Fri Dec 07 2018
Journal Name
Iraqi Journal Of Pharmaceutical Sciences ( P-issn 1683 - 3597 E-issn 2521 - 3512)
Effects of Aldosterone, Osteoprotegerin and Fibroblast Growth Factor-23 and Some Biochemical Markers in Chronic Kidney Disease Patients (Stage II-IV) among Patients with or without Cardiovascular Events
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Chronic Kidney Disease (CKD) is a public health problem and many studies support the link between kidney dysfunction and cardiovascular events.  Aldosterone has been shown for decades that a plasma aldosterone concentration is elevated in CKD. Whilst, Osteoprotegerin (OPG), after its capacity to protect bone, also osteoprotegerin is elevated in patients with chronic kidney disease (CKD), where it could predict the deterioration of kidney function, cardiovascular, vascular events and all-cause mortality. On the other hand, fibroblast growth factors (FGFs), in patients with CKD, its levels seem to increase progressively as kidney function worsens. The aim of the present study is to assess the correlations between serum osteoprotegerin

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Publication Date
Sun Dec 04 2016
Journal Name
Baghdad Science Journal
Synthesis, Characterization, Antimicrobial and Theoretical Studies of V(IV),Fe(III),Co(II),Ni(II), Cu(II), and Zn(II)Complexes with Bidentate (NN) Donar Azo Dye Ligand
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The new 4-[(7-chloro-2,1,3-benzoxadiazole)azo]-4,5-diphenyl imidazole (L) have been synthesized and characterized by micro elemental and thermal analyses as well as 1H.NMR, FT-IR, and UV-Vis spectroscopic techniques. (L) acts as a ligand coordinating with some metal ionsV(IV), Fe(III), Co(II), Ni(II), Cu(II), and Zn(II). Structures of the new compounds were characterized by elemental and thermal analyses as well as FT-IR and UV-Vis Spectra. The magnetic properties and electrical conductivities of metal complexes were also determined. Study of the nature of the complexes formed in ethanol following the mole ratio method.. The work also include a theoretical treatment of the formed complexes in the gas phase, this was done using the (hyperch

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Publication Date
Sat Dec 30 2023
Journal Name
Modern Sport
تأثير منهج تعليمي وفق أنموذج بايبي على تعلم بعض مهارات الكرة الطائرة للطالبات بكلية التربية البدنية وعلوم الرياضة
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أن أهمية البحث تكمن في أعداد منهج تعليمي مقترح وفق أنموذج بايبي وتعلم مهارتي الاعداد وأستقبال الارسال بالكرة الطائرة للطالبات وتكمن أهمية أنموذج بايبي بالمساعدة على توظيف المعلومات في المواقف المختلفة،وان مشكلة البحث جاءت بعد أطلاع الباحثات على الدراسات والمصادر السابقة لاحظت بأن هناك ضعف في الاداء المهاري في مهارتي الاعداد وأستقبال الارسال بالكرة الطائرة من قبل الطالبات لذلك أرتأت الباحثات الى التع

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Publication Date
Wed Aug 01 2018
Journal Name
Journal Of Economics And Administrative Sciences
Statistical testing mediation in structural equations models variables with practical application
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In this research was the study of a single method of estimation and testing parameters mediating variables (Mediation) in a specimen structural equations SEM a bootstrap method, for the purpose of application of the integrated survey of the situation Marital data and health mirror Iraqi (I-WISH) for the year 2011 from the Ministry of Planning - device Central Bureau of Statistics, and applied to the appropriate data from the terms of the data to a form of structural equation SEM using factor analysis affirmative (Confirmatory Factor analysis) CFA As a way to see the match variables that make up the model, and after confirming the model matching or suitability are having the effect of variables mediation in the model tested by the

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Publication Date
Sun Apr 04 2010
Journal Name
Journal Of Educational And Psychological Researches
بناء مقياس معنى الحياة كما تدركه طالبة الجامعة على وفق Multidimensional Item Response Model
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The undimensionality hypothesis which is item response theory depend it is unable in some of measurement situations because there are many dimensions which are affect of the response, so as the researches reached to expand this hypothesis to construct a new one which is multidimensional, and many of theories are pointed to the concept of meaning of life is multidimensionality, so this research aimed to construct the scale of meaning of life as the student's perception according with Multidimensional Item Response Model and this research adopt Wong's theory 1998 which point to the meaning of life consist of (7) dimensions. The research tool contains (49) items distributed at dimensions of meaning of life. Sample of statistical ana

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Publication Date
Fri Jul 01 2022
Journal Name
Iraqi Journal Of Science
Multi-layer Multi-objective Evolutionary Algorithm for Adjustable Range Set Covers Problem in Wireless Sensor Networks
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Establishing complete and reliable coverage for a long time-span is a crucial issue in densely surveillance wireless sensor networks (WSNs). Many scheduling algorithms have been proposed to model the problem as a maximum disjoint set covers (DSC) problem. The goal of DSC based algorithms is to schedule sensors into several disjoint subsets. One subset is assigned to be active, whereas, all remaining subsets are set to sleep. An extension to the maximum disjoint set covers problem has also been addressed in literature to allow for more advance sensors to adjust their sensing range. The problem, then, is extended to finding maximum number of overlapped set covers. Unlike all related works which concern with the disc sensing model, the cont

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Publication Date
Wed Jan 13 2021
Journal Name
Iraqi Journal Of Science
Smart Routing Protocol Algorithm Using Fuzzy Artificial Neural Network OSPF
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The OSPF cost is proportionally indicated the transmitting packet overhead through a certain interface and inversely proportional to the interface bandwidth. Thus, this cost may minimized by direct packet transmitting to the other side via various probable paths simultaneously. Logically, the minimum weight path is the optimum path. This paper propose a novel Fuzzy Artificial Neural Network to create Smart Routing Protocol Algorithm. Consequently, the Fuzzy Artificial Neural Network Overlap has been reduced from (0.883 ms) to (0.602 ms) at fuzzy membership 1.5 to 4.5 respectively. This indicated the transmission time is two-fold faster than the standard overlapping time (1.3 ms).

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Publication Date
Sat Dec 30 2023
Journal Name
Iraqi Journal Of Science
Effective Digital Image Colors Reduction/Quantization Method
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In the current research work, a method to reduce the color levels of the pixels within digital images was proposed. The recent strategy was based on self organization map neural network method (SOM). The efficiency of recent method was compared with the well known logarithmic methods like Floyd-Steinberg (Halftone) dithering and Octtrees (Quadtrees) methods. Experimental results have shown that by adjusting the sampling factor can produce higher-quality images with no much longer run times, or some better quality with shorter running times than existing methods. This observation refutes the repeated neural networks is necessarily slow but have best results. The generated quantization map can be exploited for color image compression, clas

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Publication Date
Tue Jun 05 2018
Journal Name
Journal Of Molecular Structure
Synthesis, characterization, experimental and theoretical structure of novel Dichloro(bis{2-[1-(4-methoxyphenyl)-1H-1,2,3-triazol-4-ylkN3] pyridine-kN})metal(II) compounds, metal ¼ Mn, Co and Ni
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The syntheses, characterizations and structures of three novel dichloro(bis{2-[1-(4-methoxyphenyl)-1H-1,2,3-triazol-4-yl-κN3]pyridine-κN})metal(II), [M(L)2Cl2], complexes (metal = Mn, Co and Ni) are presented. In the solid state the molecules are arranged in infinite hydrogen-bonded 3D supramolecular structures, further stabilized by weak intermolecular π…π interactions. The DFT results for all the different spin states and isomers of dichloro(bis{2-[1-phenyl-1H-1,2,3-triazol-4-yl-κN3]pyridine-κN})metal(II) complexes, [M(L1)2Cl2], support experimental measurements, namely that (i) d5 [Mn(L1)2Cl2] is high spin with S = 5/2; (ii) d7 [Co(L1)2Cl2] has a spin state of S = 3/2, (iii) d8 [Ni(L1)2Cl2] has a spin state of S =

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