The present study aimed to assess enzyme-linked immunosorbent assay (ELISA) and
nested-polymerase chain reaction (n-PCR) methods based on B1 gene for the detection of
Toxoplasma (T.) gondii in the blood and milk of local Iraqi goats. The SAG3 gene was also
used to identify the genotyping of T. gondii in goats and aborted women in Iraq. A total of
240 (80 blood, 80 sera, 80 milk) lactating goats and 30 blood samples from aborted women
were included in this study. A total of 17 (21.2%) infected goats were found in blood samples
and 23 (28.7%)in milk samples when using n-PCR, while the numbers were 23 (28.7%) and
17 (21.2%) when using ELISA. Aborted women had an overall infection rate of 50% when
using ELISA and 33% when using n-PCR. The degree of agreement between n-PCR in milk
and blood was almost perfect (Kappa=0.801), with a sensitivity of 100 and a specificity of
90.5, while there was a slight degree of agreement (Kappa=0.14) between n-PCR and ELISA
in blood, with 58.8 sensitivity and 74.6 specificity. The results of the comparison between nPCR in blood and ELISA in milk showed positive samples of 17 (21.2%) for each, with 82.4
sensitivity and 22.2 specificity, and no agreement (Kappa=–0.046). Sequencing of the SAG3
gene of T. gondii from goat and human isolates showed that the similarity ranged from
98.65–99.90% for genotypes I and III. In conclusion, n-PCR may be more accurate than
ELISA for detecting T. gondii in blood and milk. In addition, the phylogenetic tree's evidence
of a high degree of similarity between human and goat isolates provides further evidence